Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDILRDIGVIARALDSISNIEFKELNLAKGQFIYLVRICENQGIIQEKLVDILKIDRTTASRAIKNLEKNGLIIKKQNKNNKKNKLLFPTEKGQQLYPLIIRENEYSNAVALKGFTEAEINMLTDALKKVKENIADDWLYVKKGNKRSY
3CJN Chain:A ((25-159))
--YAPYLMNRIMGRYNANLRKEMTALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVD--DQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLANIRV-------------
General information:
TITO was launched using:
RESULT:
Template:
3CJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53168 for 865 contacts (-61.5/contact) +
2D Compatibility (PS) -14211 + (NN) -2655 + (LL) 900
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -74384.0 ( -85.99 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_3CJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJN-query.scw
PDB file :
Tito_Scwrl_3CJN.pdb
: