Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFSRFILMMAIACVAAFIFTGNGLNAKAAEEI--YLIGTDTTFAPFEFEK----DGEHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSITDERKQKFDFSDPYFDSGVVMGILKDNDEIKTYDDLKGKKVAVKTGTEGYAFAEKIKDKYDFDIVVFDDSAQMYDDVKT-RNSVACFDDYPVLAYGVQTGNGLKIVTEKEKG---NSYGFAVNKGKNQELLEKFNAGLVNIKASGEYEKILKNYLGKNAIKENTTEKGFMGIIKSSWPALLSGLWLTIRLAVVSLIIAFIIGITFGFMKVSNSKILRGIATVYVDIFRGTPLIVQAFFFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGLPHKKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTWTWLIIGIMYLIVITILTKISDRLERRLRND |
| 4YMX Chain:B ((37-258)) | ----------------------------------GVIVMGTSADFPPFEFHKVEGGKDEIVGFDIDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRVDMVIAGMTPTAERKKSVDFSDLYYDSRQVV-VVKNDSPISKFDDLKVKTIAVQIGTTSEEAAKKIP---NVKLKQLNRVSDEFMDLQNGRCDAIVVEDTVAKAY-LKEYKDMKILYMDEINNVENGSAVAVAKG-NKSLLDVVNEVIKELKQSGEYDKLVDKWF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99062 for 1766 contacts (-56.1/contact) +
2D Compatibility (PS) -23533 + (NN) -10495 + (LL) 23792
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -131848.0 ( -74.66 by residue)
QMean score : 0.612
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