Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIH--------------------------------------ETSARGVVIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSAMDLESGLEKLKQELGE
3AGD Chain:A ((323-448))
-------EGDRVFLHLQGVIRFGGAEAVLDALTDLRTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAANDGPIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERIL---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64522 for 524 contacts (-123.1/contact) +
2D Compatibility (PS) -8324 + (NN) -2900 + (LL) 3216
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -76030.0 ( -145.10 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3AGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AGD-query.scw
PDB file :
Tito_Scwrl_3AGD.pdb
: