Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGLHI-TGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLGKFPLPLEVIPFGWKQVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLF-LHYVDIIICAKANGEIELIKK
4M8L Chain:B ((13-221))
----KKLAATEAAKSITTEITLGVGTGSTVGFLIE---ELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYREQT-----ITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNI-----
General information:
TITO was launched using:
RESULT:
Template:
4M8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83120 for 1800 contacts (-46.2/contact) +
2D Compatibility (PS) -22579 + (NN) -7939 + (LL) 1320
1D Compatibility (HY) -16800 + (ID) 4300
Total energy: -133418.0 ( -74.12 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_4M8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M8L-query.scw
PDB file :
Tito_Scwrl_4M8L.pdb
: