Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLY-------NPKIRSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
3U04 Chain:A ((35-171))
----------------------------------------------DDMFETMHANQGLGLAAVQVGVHKRILVMNVPEE---IEGYELYGGPYCIINPKIVDISQEKVKLK--EGCLSV----PGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSK--------------
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56100 for 792 contacts (-70.8/contact) +
2D Compatibility (PS) -12114 + (NN) -2527 + (LL) 3548
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -80893.0 ( -102.14 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: