Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDILY--K--KTQA------VE---YFQEMIDTPGEFVQHR---Q-LYSALTVTAADASVIAILQSVTEKKQTFSPMFASI-----FAKPVIGIVTKVDLAESDKDIERAERELRM-AGAKHIFYISSVEETGIEELRAYLED
1WF3 Chain:A ((8-168))
-GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE---AMKAYHELLPEAEPRMLSALDERQVAELKADLL-
General information:
TITO was launched using:
RESULT:
Template:
1WF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55345 for 1046 contacts (-52.9/contact) +
2D Compatibility (PS) -14838 + (NN) -1912 + (LL) 508
1D Compatibility (HY) -4400 + (ID) 1300
Total energy: -77287.0 ( -73.89 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1WF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WF3-query.scw
PDB file :
Tito_Scwrl_1WF3.pdb
: