Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEI-PNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
2SSP Chain:E ((4-221))
---FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDWK----
General information:
TITO was launched using:
RESULT:
Template:
2SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89206 for 1816 contacts (-49.1/contact) +
2D Compatibility (PS) -23059 + (NN) -9658 + (LL) 716
1D Compatibility (HY) -18400 + (ID) 5550
Total energy: -145157.0 ( -79.93 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_2SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SSP-query.scw
PDB file :
Tito_Scwrl_2SSP.pdb
: