Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKA--TRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
3UHO Chain:A ((27-271))
----IGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLS-QGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNI--TTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGD----AIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNL------------
General information:
TITO was launched using:
RESULT:
Template:
3UHO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184757 for 2158 contacts (-85.6/contact) +
2D Compatibility (PS) -25693 + (NN) -8697 + (LL) 1724
1D Compatibility (HY) -21600 + (ID) 4350
Total energy: -243373.0 ( -112.78 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3UHO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHO-query.scw
PDB file :
Tito_Scwrl_3UHO.pdb
: