Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFTVLLDVEGKQQLVFKHAISTFSPQKNVALNPDAE
4NL2 Chain:B ((1-72))
MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFTVLLDVEGKQQLVFKHAISTFSPQKNVAL-----
General information:
TITO was launched using:
RESULT:
Template:
4NL2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40121 for 430 contacts (-93.3/contact) +
2D Compatibility (PS) -7585 + (NN) -1050 + (LL) -48
1D Compatibility (HY) -11200 + (ID) 3600
Total energy: -63604.0 ( -147.92 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4NL2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NL2-query.scw
PDB file :
Tito_Scwrl_4NL2.pdb
: