Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITD---K-TR--KITCEIPKDKVAKARLAIQF
2RM4 Chain:A ((5-67))
-------------------------------------------------------------------------------------------DQDWIGCAVSIACDE---VLGVFQGLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDL----
General information:
TITO was launched using:
RESULT:
Template:
2RM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24883 for 328 contacts (-75.9/contact) +
2D Compatibility (PS) -6312 + (NN) -2203 + (LL) 7028
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -29070.0 ( -88.63 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2RM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RM4-query.scw
PDB file :
Tito_Scwrl_2RM4.pdb
: