Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--VATKKKTFEEAIAELETIVEALENG---SASLEDSLDMYQKGIE------LTKLCQDKLQSAEKRMA------KVVTDAGEEIPFEADGE---------
2J9W Chain:A ((120-220))
HHMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLH
General information:
TITO was launched using:
RESULT:
Template:
2J9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1550 for 460 contacts (-3.4/contact) +
2D Compatibility (PS) -8480 + (NN) -1914 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 250
Total energy: -16594.0 ( -36.07 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_2J9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J9W-query.scw
PDB file :
Tito_Scwrl_2J9W.pdb
: