Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP----NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSD------GKTPVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEANKRFDAAK
1Y67 Chain:D ((3-212))
-AYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEG-TEFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
1Y67.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71138 for 1590 contacts (-44.7/contact) +
2D Compatibility (PS) -21004 + (NN) -5228 + (LL) 252
1D Compatibility (HY) -21200 + (ID) 6200
Total energy: -124518.0 ( -78.31 by residue)
QMean score : 0.716
(partial model without unconserved sides chains):
PDB file :
Tito_1Y67.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y67-query.scw
PDB file :
Tito_Scwrl_1Y67.pdb
: