Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKMKKMDADTLTAILAFQRLSGTGKSLLEGAAKDAEAGRYSIIAINPVHEIKVYQHDYYIDGTHQVVADPLKEIELFIEKAREDELELPLDSGAIGYVGYDVIALYEDLGEIPVETRDIPDIRFYVYESFVIMDHQAEELILVQDNCYSGRSEADLDKALESMLTELTTPKKDEHKAVHVPKMSYKSNYTKDEYMGLVKKAKTYIQE---GDFFQIVLSQRLEADFTVKPFDYYRKLRLLNPSPYLYFIDFGDTVLIGSSPE--SLIKTKGRTVITNPIAGTRRRGATKQEDELLASELLSDEKELAEHRMLVDLGRNDIGKIAETGSVHVPVYLTIERYRFLMHLVSVVEGTLKTGLTAIDALRSTLPAGTVSGAPKIRAMERIYEWENVKRGPYAGAVGYLTKNGDSDFALSIRTMVLHNGKAYVQAGAGIVYDSDPESEYLETLQKAKALLEVGE |
| 3RV6 Chain:B ((176-442)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RSVDVSDDPSGFRRRVAVAVDEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELVTAVRADG-VVITEPLAG-------------------SNSKEIVEHAISVRSSLEEITDIAEPGSAAVIDFMTVRE----QHLGSTIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRAAYQVGGRTWLRAGAGIIEESEPEREFEETCEKLSTL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RV6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52545 for 1837 contacts (-28.6/contact) +
2D Compatibility (PS) -26505 + (NN) -15670 + (LL) 16684
1D Compatibility (HY) -8800 + (ID) 4000
Total energy: -90836.0 ( -49.45 by residue)
QMean score : 0.475
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