Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLKRKVGIIGTGHVGSDVAFSLVTQGICDEIVLIDKIETKAESEALELRDMASMTNSYTMITSNDWSALGDADVIVMAVGPETLLREDRMEELVETSRSVAEIVPKIIASGFQGIFVNITNPCDVITMLIQKLSGFDHSRVFGTGTSLDTARMRRVVGEALHINPKSVEGYVLGEHGESQFVAWSTVKIGGVSI----KDYKTTTSLDLPALKDAVRGGGWNILTGKGWTSFGIATAVAGIVDAILTDAKQVFPLAVFSEK----TSTYIGQPALIGANGVIDILEPPLTETEKINFNESAEIIKNAFQLI
3VKU Chain:D ((10-310))--QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFT-SPKKIYSAEYSDAKDADLVVITAG--------------KNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLK------


General information:
TITO was launched using:
RESULT:

Template: 3VKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -230943 for 2413 contacts (-95.7/contact) +
2D Compatibility (PS) -30033 + (NN) -8330 + (LL) 2236
1D Compatibility (HY) -24000 + (ID) 5750
Total energy: -296820.0 ( -123.01 by residue)
QMean score : 0.597

(partial model without unconserved sides chains):
PDB file : Tito_3VKU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VKU-query.scw
PDB file : Tito_Scwrl_3VKU.pdb: