Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGEKEFRRLEHEKLKELATTKAVI-ATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRL--KGDTTRPL-VQQKTAEEIRAIFEPRIAHYQDSADFIVNTDNRNQQEVAQTILTMLDK
3TRF Chain:B ((14-169))
MGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQIL-----
General information:
TITO was launched using:
RESULT:
Template:
3TRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43350 for 1034 contacts (-41.9/contact) +
2D Compatibility (PS) -16695 + (NN) -5373 + (LL) 424
1D Compatibility (HY) -9200 + (ID) 2950
Total energy: -77144.0 ( -74.61 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_3TRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRF-query.scw
PDB file :
Tito_Scwrl_3TRF.pdb
: