Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLCENENAYRRRNSGNLEIEMSEITLRNRKPKRKIGKWIAIILGIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLTGKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKKPKKILHVNLGMEKETPIWEVAYLDKNDKLNYFDINFETGEWYREIENL
4J38 Chain:A ((20-151))
EFSKFTVKIKNKDKSGNW-TDLGDLVVRKEEN--------GIDTGLNAGGHSATFFSLE-------EEVVNNFVKVMTEGGSFKTSLYYGYKEEQSV-----INGIQNKEIITKIEKID-GTEYITFSGDKIKNSGDKVA------------------------EYAISLEELKKNLK----------------
General information:
TITO was launched using:
RESULT:
Template:
4J38.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25855 for 1003 contacts (-25.8/contact) +
2D Compatibility (PS) -14015 + (NN) -2171 + (LL) 4816
1D Compatibility (HY) -1200 + (ID) 1250
Total energy: -39675.0 ( -39.56 by residue)
QMean score : 0.240
(partial model without unconserved sides chains):
PDB file :
Tito_4J38.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J38-query.scw
PDB file :
Tito_Scwrl_4J38.pdb
: