Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFK-QKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
2YJ7 Chain:A ((6-105))
--------------------------------------------VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP--------NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH------
General information:
TITO was launched using:
RESULT:
Template:
2YJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35688 for 695 contacts (-51.3/contact) +
2D Compatibility (PS) -10870 + (NN) -8468 + (LL) 4780
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -58046.0 ( -83.52 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_2YJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJ7-query.scw
PDB file :
Tito_Scwrl_2YJ7.pdb
: