Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
1VDH Chain:A ((5-249))
VPEPTHTLEGWHVLHDFRLLDFARWFSAPLEAREDAWEELKGLVREWRELEEAGQGSYGIYQVVGHKADLLFLNLRPGLDPLLEAEARLSRSAFARYLGRSYSFYSVVELGSQEKPLDP----E--SPYVKPRLTPRVPKSGYVCFYPMNKRRQGQDNWYMLPAKERASLMKAHGETGRKYQGEVMQVISGAQGLDDWEWGVDLFSEDPVQFKKIVYEMRFDEVSARYGEFGPFFVGKYLDEEALRAFLGL
General information:
TITO was launched using:
RESULT:
Template:
1VDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129468 for 1873 contacts (-69.1/contact) +
2D Compatibility (PS) -26474 + (NN) -9768 + (LL) -284
1D Compatibility (HY) -22800 + (ID) 5550
Total energy: -194344.0 ( -103.76 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1VDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDH-query.scw
PDB file :
Tito_Scwrl_1VDH.pdb
: