Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRILNNKWSIRIIALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNPTTSDSNNQDTDTTDNNTDDSGDNNTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSKST |
| 2KPU Chain:A ((1-96)) | -------------------------------------SSQTLDRDPTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNPSINV----NELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEISPRVVTLQLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KPU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28397 for 605 contacts (-46.9/contact) +
2D Compatibility (PS) -10441 + (NN) -2460 + (LL) 20596
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -23802.0 ( -39.34 by residue)
QMean score : 0.532
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