Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIGIAACTSGIAHTYIAKEKLTKAGLALGHNVHIETQGTIGIEDELSAEQVKNADVVIIAADIKISGKDRFK------GKRVVEIPTDLA-IK--APKQIINKIDKEINN
3NBM Chain:A ((9-108))
----VLVLCAGSGTSAQL-ANAINEGANLTEVRVIANSGAYGAHYDI-----MGVYDLIILAPQVRSY-YREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ-
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36421 for 679 contacts (-53.6/contact) +
2D Compatibility (PS) -10055 + (NN) -2448 + (LL) 944
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -50480.0 ( -74.34 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: