Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNV-PDKIKYLAEK |
3NPP Chain:A ((1-87)) | -----------------------GRFNPFIHQQDVYVQIDRDGRHLSPG---GTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDMPDSVQSKLK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NPP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2673 for 525 contacts (5.1/contact) +
2D Compatibility (PS) -9006 + (NN) 1263 + (LL) 3304
1D Compatibility (HY) -800 + (ID) 950
Total energy: -3516.0 ( -6.70 by residue)
QMean score : 0.451
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