Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LVEQLVSNAAILLAGFYIISLVYKEPITKELSTNKKIVIGIWAGLLGFALMVFGIPISNNVIVDLRHIPIIMVGFYGGPIPAIVSAIIISASRFLLSVNSAAIMAAVVMMLIGIITAIFGKRIEKFKIWGVFILNIIACSFVVINLHLILARESHFWINMTVFVLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDA-GSRQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRRETEEYDFMIPSGQVVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNQVCIADGN |
3TVK Chain:A ((4-164)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITH-SEGHINITVTAGVSRAFP-EEPLDVVIGRADRAMYEGKQTGRNRCMFIDE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74409 for 1238 contacts (-60.1/contact) +
2D Compatibility (PS) -18128 + (NN) -12175 + (LL) 18904
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -98158.0 ( -79.29 by residue)
QMean score : 0.534
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