Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENF---VTHSKNGYYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANL--PTGMQDKPVNDVVIEKINIK
1VDN Chain:A ((16-148))
-----------------------GRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVP---------------------------CPWLDGKHVVFGEVVDGYDIVKKVESLGSPSG-----------------
General information:
TITO was launched using:
RESULT:
Template:
1VDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44570 for 911 contacts (-48.9/contact) +
2D Compatibility (PS) -13774 + (NN) -8850 + (LL) 4928
1D Compatibility (HY) -10000 + (ID) 3600
Total energy: -75866.0 ( -83.28 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1VDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDN-query.scw
PDB file :
Tito_Scwrl_1VDN.pdb
: