Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETT-WLHEAAAGTIE-PEKLMYPLDKVVNDTKTTFIQD-TVVKINKDEKTVTLDA-----NGDISYDYLLIALGSEAETFGISGLK-EYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLP-QFDAKLVDYGVGVLEDRGVEFHVGKPVKEATADGV---KYAESENEVREIKAATIIWAAGVRGNSVIEASGFE-AGRGRVKVNNNLTVPGNEEILIVGDCSLIINPAND-RPFPPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
| 1NHP Chain:A ((1-317)) | ---MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVD----------PEVNNVVVIGSGYIGIEAAEAFAKA-------------GKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE-GDGRVQKVVTD--K-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NHP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182958 for 2463 contacts (-74.3/contact) +
2D Compatibility (PS) -32744 + (NN) -11288 + (LL) 5532
1D Compatibility (HY) -11600 + (ID) 3050
Total energy: -236108.0 ( -95.86 by residue)
QMean score : 0.529
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