Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--M-VEKQ-SALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHDDIVN
1RFZ Chain:A ((1-164))
SNAMSEFIMNNLEQTARRWLEERGVTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISKREVQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALSIVNVYGSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA------
General information:
TITO was launched using:
RESULT:
Template:
1RFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123748 for 1329 contacts (-93.1/contact) +
2D Compatibility (PS) -17373 + (NN) -8292 + (LL) 208
1D Compatibility (HY) -17600 + (ID) 5450
Total energy: -172255.0 ( -129.61 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1RFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RFZ-query.scw
PDB file :
Tito_Scwrl_1RFZ.pdb
: