Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGIAVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHR------ESIHK-------KAKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLDYLNNNVYGTQIVLEVMEEFDVKHIVFSSSAATYGEPERVPITEDMPT----NPESTYGETKLIMEKMMK-WCDKAYGMKFVALRYFNVAGAKADGSIGEDHKP-ESHLVPIILQVALGQREKLAIYGDDYNTPDGTCIRDYVQVEDLIDAHIRALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPAEVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY |
1I3M Chain:B ((5-344)) | --VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP---YGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAA-LGLDRMCEDLWRWQKQNPSGF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1I3M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173716 for 2830 contacts (-61.4/contact) +
2D Compatibility (PS) -34265 + (NN) -15457 + (LL) 256
1D Compatibility (HY) -29200 + (ID) 7150
Total energy: -259532.0 ( -91.71 by residue)
QMean score : 0.625
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