Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
1R8D Chain:A ((3-107))
YQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPN--------FDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1R8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49221 for 625 contacts (-78.8/contact) +
2D Compatibility (PS) -11354 + (NN) -8181 + (LL) 2640
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -71666.0 ( -114.67 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1R8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8D-query.scw
PDB file :
Tito_Scwrl_1R8D.pdb
: