Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTAKSDEESHELLTQLGMPFQK
1MJI Chain:A ((4-182))
DVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK
General information:
TITO was launched using:
RESULT:
Template:
1MJI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67282 for 1305 contacts (-51.6/contact) +
2D Compatibility (PS) -19279 + (NN) -7968 + (LL) 0
1D Compatibility (HY) -22000 + (ID) 5150
Total energy: -121679.0 ( -93.24 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1MJI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MJI-query.scw
PDB file :
Tito_Scwrl_1MJI.pdb
: