Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLV----VLEGLTFDAPKTKEFAAFLKNISVD-TKALIVVAG---ESENVELSARNLQGITVIPA---------------ESISVLEVAKHDKLIITKAAVEKVEEVLA
1DMG Chain:A ((1-225))
-AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSD-----------------------------------------------------WSKKLNKKMKKLALRSALSVKYRE----NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG
General information:
TITO was launched using:
RESULT:
Template:
1DMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98468 for 1121 contacts (-87.8/contact) +
2D Compatibility (PS) -16521 + (NN) -9724 + (LL) 1876
1D Compatibility (HY) -18800 + (ID) 2850
Total energy: -144487.0 ( -128.89 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1DMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DMG-query.scw
PDB file :
Tito_Scwrl_1DMG.pdb
: