Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQG-DYPHARYMTFLHDGLTLYTPSGKELPKTDEVRRNPHVSVLIGYESPG------SAFLEINGLASLEEDE-SIKERIWENISKEWFR----GEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
3TGV Chain:A ((2-141))
---RLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEQGLFVKGFGLE--------
General information:
TITO was launched using:
RESULT:
Template:
3TGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31152 for 899 contacts (-34.7/contact) +
2D Compatibility (PS) -14392 + (NN) -9134 + (LL) 372
1D Compatibility (HY) -7200 + (ID) 1000
Total energy: -62506.0 ( -69.53 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_3TGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TGV-query.scw
PDB file :
Tito_Scwrl_3TGV.pdb
: