Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISGMH-------------W--DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA-YDYKHDAAIVYA-E-QPFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 3W4Q Chain:A ((2-257)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SFAALERA--AGGRLGVCAIDTATGRRALHRADERFPFCSTFKAMLGAAVLAQSVAHPGLLQQRVTYGRSDL-------VNYSPVTERH-VDTGMTVAELCAATIQYSDNTAANELMKRIGGP--AAVTAYARS-IGDDTFRLDRWETELNTALPGDLRDTTTPAAMAANLRVLVLGDALPPAQRAQLIEWLRGNKVGDKRIRAGVPTGWRVGDKTGTGDYGTTNDVGVLWPPSRAPIVLAVYYTQTRADAKAKDDVIAAATRIASATLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84550 for 1920 contacts (-44.0/contact) +
2D Compatibility (PS) -23941 + (NN) -7883 + (LL) 14304
1D Compatibility (HY) -1200 + (ID) 2000
Total energy: -105270.0 ( -54.83 by residue)
QMean score : 0.425
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