Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVG-VLKEEIYSK
3O7M Chain:D ((7-176))
----EIKDTLISEEQLQEKVKELALQIERDFEGEEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISASSY--------KVKLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVDLTAEYVGFQIPDEFIVGYGIDCAEKYRNLPFIASVV-------
General information:
TITO was launched using:
RESULT:
Template:
3O7M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127222 for 1243 contacts (-102.4/contact) +
2D Compatibility (PS) -17371 + (NN) -5017 + (LL) 588
1D Compatibility (HY) -20400 + (ID) 4050
Total energy: -173472.0 ( -139.56 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_3O7M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O7M-query.scw
PDB file :
Tito_Scwrl_3O7M.pdb
: