Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIETMSLDDMREYLGQDQIPEDFDDFWKKQTMKY-QGNIEYRLDKKDFNITFAQAYDLHFKGSNDSIVYAKCLFPKTNKPYPVVFYFHGYQNQSPDWS--DQLNYVAAGYGVVSMDVRGQAGQSQDKGHFDGITVKGQIVRGMISGPNHLFYKDIYLDVFQLIDIIATLESVDSNQLYSYGWSQGGALALIAAALN--PKIVKTVAVYPFLSDFRRVLDLGGVSEPYDELFRYFKY-SDPFHKTENSVLKTLAYIDVKNFAHRISCPVVLLTALKDDICPPSTQFAIFNRLTSTKKHLLLPDYGHDPMTVQVKDYIFDQLTGSQFTKQKIE |
| 3FVT Chain:F ((6-299)) | ----LSLEELKKYKPKKTARPDFSDFWKKSLEELRQVEAEPTLESYDYPVKGVKVYRLTYQSFGHSKIEGFYAVPDQTGPHPALVRFHGY-NASYDGGIHDIVNWALHGYATFGMLVRGQGG-SEDTSVTPGGHALGWMTKGILSKDTY-YYRGVYLDAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVV--VADYPYLSNFERAVDV-ALEQPYLEINSYFRRNSDP--KVEEKAFETLSYFDLINLAGWVKQPTLMAIGLIDKITPPSTVFAAYNHLETDKDLKVYRYFGHEFIPAFQTEKLSFLQKHLLLST---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FVT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208165 for 2554 contacts (-81.5/contact) +
2D Compatibility (PS) -31375 + (NN) -18146 + (LL) 1416
1D Compatibility (HY) -16800 + (ID) 5250
Total energy: -278320.0 ( -108.97 by residue)
QMean score : 0.539
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