Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVA-----VENLSFAAPKTAEFASVLSALSID-SKVLVIL---EEGNEFAALSARNLPNVTVATATTA---------------SVLDIVNADKLLVTKEAISTIEGVLA
1DMG Chain:A ((1-225))
-AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSD-----------------------------------------------------WSKKLNKKMKKLALRSALSVKYRE-----NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVLG
General information:
TITO was launched using:
RESULT:
Template:
1DMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92915 for 1072 contacts (-86.7/contact) +
2D Compatibility (PS) -15678 + (NN) -3701 + (LL) 1788
1D Compatibility (HY) -17200 + (ID) 2700
Total energy: -130406.0 ( -121.65 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1DMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DMG-query.scw
PDB file :
Tito_Scwrl_1DMG.pdb
: