Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4QBH Chain:A ((1-216))
MNLVLMGLPGAGKGTQAERIVEAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLGKDD-CERGFLLDGFPRTVAQAEALEEILEEIGRPIDYVIHIEVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEETVAKRLEVNMKQMKPLLDFYEQKGYLRNVNGQQDMQDVFADVRELLGGLK
General information:
TITO was launched using:
RESULT:
Template:
4QBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56375 for 1654 contacts (-34.1/contact) +
2D Compatibility (PS) -22958 + (NN) -10548 + (LL) 204
1D Compatibility (HY) -22800 + (ID) 5900
Total energy: -118377.0 ( -71.57 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4QBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBH-query.scw
PDB file :
Tito_Scwrl_4QBH.pdb
: