Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVD-AIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK
4JI4 Chain:M ((2-119))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAG---
General information:
TITO was launched using:
RESULT:
Template:
4JI4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26580 for 736 contacts (-36.1/contact) +
2D Compatibility (PS) -12070 + (NN) 702 + (LL) 400
1D Compatibility (HY) -9200 + (ID) 3450
Total energy: -50198.0 ( -68.20 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_4JI4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JI4-query.scw
PDB file :
Tito_Scwrl_4JI4.pdb
: