Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRL--HVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMH-----GHDFL-PFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
1G5C Chain:F ((5-163))
------DILREN------------P-----KLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRM-RELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRLKPLY
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102689 for 982 contacts (-104.6/contact) +
2D Compatibility (PS) -15321 + (NN) -12728 + (LL) 1712
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -146426.0 ( -149.11 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: