Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDV--KAVIRTGENTPYSNIILQSGVII
3P13 Chain:D ((7-134))
----AVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVT-
General information:
TITO was launched using:
RESULT:
Template:
3P13.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65546 for 940 contacts (-69.7/contact) +
2D Compatibility (PS) -13924 + (NN) -10325 + (LL) 592
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -101853.0 ( -108.35 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_3P13.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P13-query.scw
PDB file :
Tito_Scwrl_3P13.pdb
: