Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGVGKMASAIIQGLKQTQH----DIVISGSCLERSKEIAERLDVTYAESHQSLINQADIIMLGIKPQLFEKVLLPLD---ITKPIISMAAGISLARLSQLTRSDLPLIRIMPNINAQILQSCTAICYNNHVSDELRQLTKEITDSFGSSFDIAETNFDTFTALAGSSPAYIYLFIEALAKAGVKYGFPKEQALSIVGQTVLASSQNLLQGQNSTSDLIDNICSPGGTTIAGLLDLEKNGLTHSVISAIDATIEKAKKL
2RCY Chain:A ((5-260))
IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNT-------TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAACEKSKAM
General information:
TITO was launched using:
RESULT:
Template:
2RCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160828 for 1813 contacts (-88.7/contact) +
2D Compatibility (PS) -26691 + (NN) -6363 + (LL) 896
1D Compatibility (HY) -19200 + (ID) 4000
Total energy: -216186.0 ( -119.24 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_2RCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCY-query.scw
PDB file :
Tito_Scwrl_2RCY.pdb
: