Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIATINKNDLIALGFS---------EGTSKRIIRQGKELLIARGFRVYQNKRIGTIPAS--IATEL------LGFDVQNSSLSRG
1KP6 Chain:A ((1-79))
-----NNAFCAGFGLSCKWECWCTAHGTGNELRYATAAGCGDHLSKSYYDARAGHCLFSDDLRNQFYSHCSSLNNNMSCRSLSK-
General information:
TITO was launched using:
RESULT:
Template:
1KP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11485 for 340 contacts (-33.8/contact) +
2D Compatibility (PS) -6620 + (NN) -313 + (LL) 640
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -20028.0 ( -58.91 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1KP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KP6-query.scw
PDB file :
Tito_Scwrl_1KP6.pdb
: