Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLIVNSHPDFSNPY-SFTTILQEKFIELYNEHFPNHQLSILNLYDCVLPEITKEVLLSIWSKQRKGLELTADEIVQAK---ISKDLLEQFKSHHRIVFVSPMHNYNVTARAKTYIDNIFIAGETFKYTENGSVGLMTDDYRLLMLESAGSIYSKGQYSPYEFPVHYLKAIFKDFMAFDDFCVVRAEGTDIL--DRQVVLDKMNQDLREAFEAFYSKE
1T5B Chain:A ((1-201))
MSKVLVLKSSILA--GYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELV-GAMR-------DAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVT-GKRAVVLSSRGGIHKDTP---TDLIAPYLKVFLG-FIGITDVNFVFAEGIAYGPEVAAKAQADAKAAIDSVVAA-----
General information:
TITO was launched using:
RESULT:
Template:
1T5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129779 for 1485 contacts (-87.4/contact) +
2D Compatibility (PS) -20794 + (NN) -10121 + (LL) 548
1D Compatibility (HY) -9600 + (ID) 2600
Total energy: -172346.0 ( -116.06 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1T5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T5B-query.scw
PDB file :
Tito_Scwrl_1T5B.pdb
: