Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIYFKASVKPFVPKSVVREVEKMSEE
4NAT Chain:B ((6-157))
----AVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLK----EGTFSLEERMDLIEQSVKHLPNVKVHQFSG-LLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK-
General information:
TITO was launched using:
RESULT:
Template:
4NAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105224 for 1121 contacts (-93.9/contact) +
2D Compatibility (PS) -15990 + (NN) -4729 + (LL) 960
1D Compatibility (HY) -13200 + (ID) 3100
Total energy: -141283.0 ( -126.03 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4NAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAT-query.scw
PDB file :
Tito_Scwrl_4NAT.pdb
: