Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTRSKLAAGFLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKELTEANYKEAYKNYTPETSVQVIKLDAEDKAKSVLKDVKADGADFAKIAKEKTTATD--KKVEY-KFDSAGTSLPKEVMSAAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVKIKDKAFAGILSQYATTSGSSSLKK |
1M5Y Chain:A ((202-276)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------IVDQAR-NGADFGKLAIAHSADQQALNGGQMGWGRI--QELPGIFAQALSTAKKGDIVGPIRSGV------GFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -12665 for 404 contacts (-31.3/contact) +
2D Compatibility (PS) -7896 + (NN) -5652 + (LL) 11724
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -16789.0 ( -41.56 by residue)
QMean score : 0.657
|
|
|