Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNKKTQAL-IEQYSKSLVEVAIEHKIVEKIQQEVAALIDIFETSELEGVLSSLAVSHDEKQHFVKTLQTSCSTYLVNFLEVIVQNEREA------------LLYPILKSVDQELIKVNGQYPI-QITTAVALSPEQKER-LFDIAKTKLALPN-GQLVEH--IDPSIVGGFVVNANNKVIDASVRNQLHQFKMKLK
4N6C Chain:A ((2-183))
GHHHHHHSHMLRTYEN-------KEELKAEIEKTFEKYILEFDNIPENL--------KDKRADEVDRTPAENLAYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSISAMIDSLSEEELFEPHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
General information:
TITO was launched using:
RESULT:
Template:
4N6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18170 for 1187 contacts (-15.3/contact) +
2D Compatibility (PS) -16967 + (NN) -1928 + (LL) 1780
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -40485.0 ( -34.11 by residue)
QMean score : 0.338
(partial model without unconserved sides chains):
PDB file :
Tito_4N6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6C-query.scw
PDB file :
Tito_Scwrl_4N6C.pdb
: