Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKCPIIALDFSDLASVTTFLEHFPKEELLFVKIGMELYYSEGPSIIRYIKSLGHRIFLDLKLHDIPNTVRSSMSVLAKLGIDMTNVHAAGGVEMMKAAREGLGEGP-------ILLAVTQLTSTSQEQMQVDQH---INLSVVDSVCHYAQKAQEAGLDGVVASAQEVKQIKKQTNEHFICLTPGIRPPQTNQLDDQKRTMTPEQARIVGADYIVVGRPITKAENPYQAYLEIKEEWNRIK
2YYU Chain:A ((5-236))
---TPFIVALDFPSKQEVERFLRPFA-GTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALA---KESGLDGVVCSANEAAFIKERCGASFLAVTPGIRFAD--------RVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN---
General information:
TITO was launched using:
RESULT:
Template:
2YYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138925 for 1783 contacts (-77.9/contact) +
2D Compatibility (PS) -23396 + (NN) -10643 + (LL) 1548
1D Compatibility (HY) -18800 + (ID) 5300
Total energy: -195516.0 ( -109.66 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_2YYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYU-query.scw
PDB file :
Tito_Scwrl_2YYU.pdb
: