Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKVRRHFTDDFKQQIVDLYNVGRKRSSLIKEYELTPSTFDKWVRQAKTTGSFKSVDNLT--------DEQRELIELRKHNKELEMQLDIL----KQAAVIMAQKGK---
2LVS Chain:A ((1-105))
------MPSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVYEIARQLGRPESTIYYALKKLGLKLE
General information:
TITO was launched using:
RESULT:
Template:
2LVS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18009 for 525 contacts (-34.3/contact) +
2D Compatibility (PS) -9683 + (NN) -2913 + (LL) 636
1D Compatibility (HY) 800 + (ID) 750
Total energy: -29919.0 ( -56.99 by residue)
QMean score : 0.746
(partial model without unconserved sides chains):
PDB file :
Tito_2LVS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVS-query.scw
PDB file :
Tito_Scwrl_2LVS.pdb
: