Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSLNGETLLTGLIANPARHSLSPLMWNTSFQEKNMNYAYLTFEVEEGKLTEAVRGVRALGIRGVNVSMPFKQSVIPLLDDLSPQAKLVGAVNTIVNQGGTGRLVGHMTDGIGCFKALAAQGFSAKNKIVTIAGIGGSGKAVAVQAAMEGVAEIRLFNRNSSNYDKVIDLSDKIKKQFQIKVVVDYLENKTAFKDAIRTSHFYIDATSLGMRPLDNYSLINDPEILTPNL-----VVVDLVYKPKETALLRFVRQNGVKHAYNGLGMLIYQGAEAFQLITNQEMPISSVERVLQTEN
2HK9 Chain:B ((8-268))
---INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEG-AKVFLWNRTK---EKAIKLAQK----FPLEVV-------NSPEEVIDKVQVIVNTTSVGLKD-------EDPEIFNYDLIKKDHVVVDIIY--KETKLLKKAKEKGAK-LLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRDL-
General information:
TITO was launched using:
RESULT:
Template:
2HK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157036 for 2182 contacts (-72.0/contact) +
2D Compatibility (PS) -27675 + (NN) -11818 + (LL) 1480
1D Compatibility (HY) -23600 + (ID) 5150
Total energy: -223799.0 ( -102.57 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_2HK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HK9-query.scw
PDB file :
Tito_Scwrl_2HK9.pdb
: