Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVELNLNHIYKKYPSASHYSVEDFDLDIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISEGELKIDGEVVNDKSPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKFSKQEIDKRVREAAANIGLTEFLERKPADLSGGQRQRVAMGRAIVRDAKVFLMDEPLSNLDAKLRVSMRAEIAKIHQRIGSTTIYVTHDQTEAMTLADRIVIMSATKNPDGDGTIGKIEQVGSPQELYNLPANKFVAGFIGSPSMNF---FKVKVENGM-IISEDGLRIAIPEGQEKLLESRGYKGKELIFGIRPEDIS-SNLLVQDTYPNANVEAEVLVSELLGSETMLYVKLGQTEFASRV-EARDFHNPGEKVNLTFNVAKGHFFDADTEQAIR |
2YYZ Chain:A ((18-358)) | -------------------AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQ----------GKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRDDVIIKLPEPVD-------VKLKEVVVGIRPEHCRISRERVENSIPGV-----VYVVEPLGRDIIVNVKTEKGEIIKVFGDTGKAPQPGENVFLVPDLRKIHLFNPETEETIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YYZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163583 for 2540 contacts (-64.4/contact) +
2D Compatibility (PS) -36694 + (NN) -11846 + (LL) 1880
1D Compatibility (HY) -35200 + (ID) 8150
Total energy: -253593.0 ( -99.84 by residue)
QMean score : 0.495
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