Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3LMV Chain:C ((1-157))
MRVVIQRVKGAILSVR--------KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD-
General information:
TITO was launched using:
RESULT:
Template:
3LMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88579 for 960 contacts (-92.3/contact) +
2D Compatibility (PS) -14913 + (NN) -7127 + (LL) 404
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -127415.0 ( -132.72 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3LMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMV-query.scw
PDB file :
Tito_Scwrl_3LMV.pdb
: