Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------MDETVKLNHTCVIC-DQEKNRGIHLYTKFICLDCERKVISTSTSD-PDYAFYVKKLKSIHTPPLYS-
2K4D Chain:A ((1-83))
GSLQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPFDPR
General information:
TITO was launched using:
RESULT:
Template:
2K4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4672 for 389 contacts (-12.0/contact) +
2D Compatibility (PS) -6694 + (NN) -100 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -14866.0 ( -38.22 by residue)
QMean score : 0.206
(partial model without unconserved sides chains):
PDB file :
Tito_2K4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4D-query.scw
PDB file :
Tito_Scwrl_2K4D.pdb
: